Molecular Detection of NontuberculousMycobacteria (Mycobacterium Chelonae, MycobacteriumAbscessus Group and Mycobacterium Fortuitum Complex) Among Patient with Post-Operative Wound Infection in Khartoum State - Sudan

Authors

  • Mohamed Mostafa  Department of Medical microbiology, Faculty of Medical Laboratory Science, El Nellin University, Khartoum, Sudan
  • Abdel Rahim M El Hussein  Department of Virology, Central Laboratory- The Ministry of Higher Education and Scientific Research, Khartoum, Sudan
  • Mohamed O. Mustafa  Department of Virology, Central Laboratory- The Ministry of Higher Education and Scientific Research, Khartoum, Sudan
  • Isam M Elkhidir  Department of Microbiology and Parasitology, Faculty of Medicine, University of Khartoum, Khartoum, Sudan
  • Khalid A Enan  Department of Virology, Central Laboratory- The Ministry of Higher Education and Scientific Research, Khartoum, Sudan

Keywords:

NTM, CTAB, DNA, RGM, MFC, MC–MAG, PCR

Abstract

Background
Nearly 100 mycobacterium belong to rapidly growing mycobacterium (RGM), the most common pathogens being M. chelonae M. abscessus groups and M. fortitum complex, M. abscessus is more resistant to antibiotic and disinfection. Nontuberculosis mycobacteria have been isolated from various sites viz., cutaneous and soft tissue infection, after skin injury following inoculation and after surgical procedures and also, known to cause systemic infection in AIDS and immunocompromised patients. Surgical site infection due to atypical mycobacterium usually has a long incubation period.
Material and Method
Swaps from infected wound surgical were collected randomly from 40 patients, the bacterial DNA were extracted from the samples by using the CTAB method. The different primer designed to detect M. abscessus, M. chelonae, and M. fortitum complex. Were used DNA amplification was performed under different optimization PCR condition for different nontuberculosis mycobacteria species. The PCR products were separated by electrophoresis using 2% agarose and the products were visualized in gel documentation system. A 100pb ladder was used for comparison of product length.
Result
The prevalence of NTM infection among patients with post-operative wounds was 17.5% for M. abscessus, 15% for M. fortitum and 0% for M. chelonae. Infection was higher in males (17.5%) in comparison to females (7.5%). NTM organism were detected in all delayed healing periods from 7 days to two years.


Conclusion

Our result shows that the M. abscessus and M. fortitum infection were found among patient with post operative wounds in Sudan. The infection are higher in males than females. Further investigation is needed to identify strains of NTM found in hospitals for proper control it and to study whether this microorganism can cause (nosocomial infection).

References

  1. Katoch VM (2004) Infections due to non-tuberculous mycobacteria (NTM). Indian J Med Res120:290-304.
  2. Wallace RJ Jr, O Brien R, Glassroth J, Raleigh J, Dutta A(1990) Diagnosis and treatment of disease caused by nontuberculous mycobacteria. Am Rev Respir Dis142:940-953.
  3. O' Brien RJ, Geiter LJ, Snider DE Jr (1987) The epidemiology of non-tuberculous mycobacteria diseases in the UnitedStates. Results from a national survey. Am Rev Respir Dis135:1007-1014.
  4. Tsukamura M, Kita N, Shimoide H, Arakawa H, Kuze A (1988) Studies on the epidemiology of non-tuberculousmycobacteriosisin Japan. Am Rev Respir Dis137:1280-1284.
  5. Borghans JG, Stanford JL (1973) Mycobacterium chelonae in abscesses after injection of diphtheria-tetanus-pertussis is polio vaccine.Am Rev Respir Dis 107:1-8.
  6. Bruijnesteijn van Coppenraet, E. S., J. A. Lindeboom, J. M. Prins, M. F.Peeters, E. C. Claas, and E. J. Kuijper. 2004. Real-time PCR assay using fine-needle aspirates and tissue biopsy specimens for rapid diagnosis of mycobacterial lymphadenitis in children. J. Clin. Microbiol. 42:2644-2650.
  7. Chimera, E., L. Ferrazoli, S. Y. Ueky, M. C. Martins, A. M. Durham, R. D.Arbeit, and S. C. Lea˜o.(2008). Reliable identification of mycobacterial species by PCR-restriction enzyme analysis (PRA)-hsp65 in a reference laboratory and elaboration of a sequence-based extended algorithm of PRA-hsp65 patterns .BMC Microbiol. 8:48.
  8. Collins, D. M., S. Cavaignac, and G. W. de Lisle. (1997). Use of four DNA insertion sequences to characterize strains of the Mycobacterium aviumcomplexisolated from animals. Mol. Cell. Probes11:373-380.
  9. Devallois, A., M. Picardeau, C. N. Paramasivan, V. Vincent, and N. Rastogi.(1997). Molecular characterization of Mycobacterium aviumcomplex isolates giving discordant results in AccuProbe tests by PCR-restriction enzyme analysis, 16S rRNA gene sequencing, and DT1-DT6 PCR. J. Clin. Microbiol.35:2767-2772.
  10. Devulder, G., M. Pe´rouse de Montclos, and J. P. Flandrois. (2005). A multigene approach to phylogenetic analysis using the genus Mycobacterium as a model. Int. J. Syst. Evol. Microbiol.55:293-302.
  11. Flint, D., M. Mahadevan, C. Barber, D. Grayson, and R. Small.(2000).Cervical lymphadenitis due to non-tuberculous mycobacteria: a surgical treatment and review. Int. J. Pediatr. Otorhinolaryngol. 53:187-194.
  12. Garza-Gonzalez, E., M. Guerrero-Olazaran, R. Tijerina-Menchaca, andJ. M. Viader-Salvado.(1998). Identification of mycobacteria by mycolic acid pattern. Arch. Med. Res. 29:303-306.
  13. Alcaide, F., Benitez, M.A., Escriba, J.M., et al. (2000): Evaluation of the BACTEC MGIT 960 and the MB/BacT systems for recovery of mycobacteria from clinical specimens and for species identification by DNA AccuProbe. J. Clin. Microbiol.,38:398-401.
  14. Tortoli, E., Mariottini, A. and Mazzarelli, G. (2003): Evaluation ofINNO-LiPA MYCOBACTERIA v2: improved reverse hybridization multiple DNA probe assay for mycobacterial identification. J. Clin.Microbiol.,41:4418-4420.
  15. Russo, C., Tortoli, E. and Manichella, D. (2006): Evaluation of the new genotype Mycobacterium assay for identification of mycobacterial species. J. Clin. Microbiol.,44: 334-339.
  16. Kirschner, P. and Bottger, E.C. (1998): Species identification of mycobacteria using rDNA sequencing. Methods Mol. Biol.,101:349-361.
  17. Lee, H., Bang, H.-E., Bai, G.-H., et al. (2003): Novel polymorphic region of the rpoBgene containing Mycobacterium species-specific sequences and its use in identification of mycobacteria. J. Clin.Microbiol.,41:2213-2218.
  18. McNabb, A., Adie, K., Rodrigues, M., et al. (2006): Direct identification of mycobacteria in primary liquid detection media by partial sequencing of the 65-kilodalton heat shock protein gene. J. Clin.Microbiol.,44:60-66.
  19. Zelaney, A.M., Calhoun, L.B., Li, L., et al. (2005): Identification ofMycobacterium species by secA1 sequences. J. Clin. Microbiol.,43:1051-1058.
  20. Roth, A., Fischer, M., Hamid, M.E., et al. (1998): Differentiation of phylogenetically related slowly growing mycobacteria based on16S-23S rRNA gene internal transcribed spacer sequences. J. Clin. Microbiol.,36: 139-147.
  21. Chadha R, Grover M, Sharma A, Lakshmy A, Deb M, Kumar A, et al.(1998). An outbreak of post-surgical wound infections due to Mycobacterium abscessus. PaedSurgInt13:406-10.
  22. Rodrigues C, Mehta A, Jha U, Bharucha M, Dastur FD, Udwadia TE(2005). Nosocomial Mycobacterium chelonae infection in laparoscopic surgery. Infect Control HospEpidemiol22:474-5.
  23. Juri B Kalita, Rahman H, Baruah KC (2005) Delayed post-operative wound infections due to non-tuberculous Mycobacterium. Indian J Med Res122:535-539
  24. Pai HH, Chen WC, Peng CF (2003) Isolation of nontuberculous mycobacteria from hospital cockroaches (Periplaneta Americana). J Hosp Infect 53(3):224-228
  25. Wagner D, Young LS (2004) Nontuberculous mycobacterial infections: A clinical review. Infection 32(5):257-270.
  26. Prado AC, Castillo PF(2004).lay clinics an epidemic outbreak of Mycobacterium skin and soft tissue infection, plastreconstrsurg, 113:800-1.
  27. Szabo I, Sarkozi K(1980).Mycobacterium chelonaeendemy after heart surgery with fatal consequences, Am RevRespir Dis, 121 pg. 607.
  28. Murillo J,Torres J, Bofill L,(2000).skin and wound infection by rapidly growing mycobacteria : an unexpected complication of liposuction and lipos culpture. Arch Dermatol,136 (pg 1347 52).

Downloads

Published

2018-04-30

Issue

Section

Research Articles

How to Cite

[1]
Mohamed Mostafa, Abdel Rahim M El Hussein, Mohamed O. Mustafa, Isam M Elkhidir, Khalid A Enan, " Molecular Detection of NontuberculousMycobacteria (Mycobacterium Chelonae, MycobacteriumAbscessus Group and Mycobacterium Fortuitum Complex) Among Patient with Post-Operative Wound Infection in Khartoum State - Sudan, International Journal of Scientific Research in Science, Engineering and Technology(IJSRSET), Print ISSN : 2395-1990, Online ISSN : 2394-4099, Volume 4, Issue 4, pp.183-189, March-April-2018.