Applications of DNA bases, Graphene and Biosensors : A Critical Review

Authors

  • Shamsan Ali  Department of Physics, Aden University, Aden, Yemen
  • Baliram G. Lone  Nanomaterials Research Laboratory, Department of Physics, Vinayakrao Patil Mahavidyalaya Vaijapur, Dist. Aurangabad, Maharashtra, India

DOI:

https://doi.org//10.32628/IJSRSET229247

Keywords:

DNA bases, Graphene (Go), Graphene oxide (rGo), and biosensing.

Abstract

The current research paper presents a theoretical exploration of the interaction between 2-D nanomaterials and the DNA bases that embody graphene properties and biosensors applications. Regarding its role as a conveyer of genetic information, Deoxyribonucleic acid (DNA) has been understood as a constructed substance for various components and structural collations with nanoparticle merits. It is counted as the bearer of genetic information in the human being's life, where it is a fundamental biomacromolecule in almost all living apparatuses. Because of DNA's self-recognition characteristics (based on the specific base pairing of G-C and T-A), more attention has been drawn to monolayer films of nucleic acids. It is seen that many doping techniques have been carefully investigated. Thus, this survey article provides a new and comprehensive outline of the modern strategies that include specifically immobilized DNA on Graphene. further, it is expected in the near future that there will be a designee of DNA nanodevices that are distinguished in smartness, accuracy, and sensitivity where they will contribute to the fields of biological analysis, clinical diagnosis, and biomedicine

References

  1. W. J. N. Jd, "Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid," vol. 171, no. 4356, pp. 737-738, 1953.
  2. S. Ali and B. Lone, "Density functional investigation of cytosine on platinum decorated graphene," in AIP Conference Proceedings, 2021, vol. 2335, no. 1, p. 080001: AIP Publishing LLC.
  3. H. Vovusha and B. J. R. a. Sanyal, "Adsorption of nucleobases on 2D transition-metal dichalcogenides and graphene sheet: a first principles density functional theory study," vol. 5, no. 83, pp. 67427-67434, 2015.
  4. Y. Feng, Y. Zhang, C. Ying, D. Wang, C. J. G. Du, proteomics, and bioinformatics, "Nanopore-based fourth-generation DNA sequencing technology," vol. 13, no. 1, pp. 4-16, 2015.
  5. N. Yang and X. J. C. Jiang, "Nanocarbons for DNA sequencing: A review," vol. 115, pp. 293-311, 2017.
  6. P. He, Y. Xu, and Y. J. A. l. Fang, "A review: electrochemical DNA biosensors for sequence recognition," vol. 38, no. 15, pp. 2597-2623, 2005.
  7. K. J. Odenthal and J. J. J. A. Gooding, "An introduction to electrochemical DNA biosensors," vol. 132, no. 7, pp. 603-610, 2007.
  8. J. Qasem and B. Lone, "Characterization of DNA NucleobasesonPristine Gallium Nitride N anotubes: A First PrinciplesApproach."
  9. Q. He, S. Wu, Z. Yin, and H. J. C. S. Zhang, "Graphene-based electronic sensors," vol. 3, no. 6, pp. 1764-1772, 2012.
  10. H.-I. Peng and B. L. J. A. Miller, "Recent advancements in optical DNA biosensors: exploiting the plasmonic effects of metal nanoparticles," vol. 136, no. 3, pp. 436-447, 2011.
  11. K. S. Novoselov et al., "Electric field effect in atomically thin carbon films," vol. 306, no. 5696, pp. 666-669, 2004.
  12. V. Sorkin, H. Pan, H. Shi, S. Quek, Y. J. C. r. i. s. s. Zhang, and m. sciences, "Nanoscale transition metal dichalcogenides: structures, properties, and applications," vol. 39, no. 5, pp. 319-367, 2014.
  13. K. Novoselov et al., "Electronic properties of graphene," vol. 244, no. 11, pp. 4106-4111, 2007.
  14. B. J. J. N. N. Lone, "Adsorption of cytosineon single-walled carbon nanotubes," vol. 7, no. 1, p. 354, 2016.
  15. B. S. Husale, S. Sahoo, A. Radenovic, F. Traversi, P. Annibale, and A. J. L. Kis, "ssDNA binding reveals the atomic structure of graphene," vol. 26, no. 23, pp. 18078-18082, 2010.
  16. Z. Yan, Z. Peng, and J. M. J. A. o. c. r. Tour, "Chemical vapor deposition of graphene single crystals," vol. 47, no. 4, pp. 1327-1337, 2014.
  17. P. T. Yin, T.-H. Kim, J.-W. Choi, and K.-B. J. P. C. C. P. Lee, "Prospects for graphene–nanoparticle-based hybrid sensors," vol. 15, no. 31, pp. 12785-12799, 2013.
  18. J. Qasem and B. G. Lone, "DFT Study of Thymine Adsorption on Zr Doped Graphene."
  19. D. G. Papageorgiou, I. A. Kinloch, and R. J. J. P. i. M. S. Young, "Mechanical properties of graphene and graphene-based nanocomposites," vol. 90, pp. 75-127, 2017.
  20. D. Akinwande et al., "A review on mechanics and mechanical properties of 2D materials—Graphene and beyond," vol. 13, pp. 42-77, 2017.
  21. O. Güler, N. J. J. o. M. R. Bağcı, and Technology, "A short review on mechanical properties of graphene reinforced metal matrix composites," vol. 9, no. 3, pp. 6808-6833, 2020.
  22. A. Hirsch and F. J. A. C. I. E. Hauke, "Post‐Graphene 2D Chemistry: The Emerging Field of Molybdenum Disulfide and Black Phosphorus Functionalization," vol. 57, no. 16, pp. 4338-4354, 2018.
  23. G. R. Bhimanapati et al., "Recent advances in two-dimensional materials beyond graphene," vol. 9, no. 12, pp. 11509-11539, 2015.
  24. S. Araby et al., "Electrically and thermally conductive elastomer/graphene nanocomposites by solution mixing," vol. 55, no. 1, pp. 201-210, 2014.
  25. Z. Yan, D. L. Nika, A. A. J. I. C. Balandin, Devices, and Systems, "Thermal properties of graphene and few-layer graphene: applications in electronics," vol. 9, no. 1, pp. 4-12, 2015.
  26. K. Emtsev, "Electronic and structural characterizations of unreconstructed SiC {0001} surfaces and the growth of graphene overlayers," 2009.
  27. A. M. Ali, D. Gharami, and N. S. Mimi, "Simulation of atomic level width controlled graphene Nanoribbon field effect transistors and an ab initio study of h 2 o molecules adsorption on semiconducting GNR," BARC University, 2017.
  28. H. S. Hwang, J. W. Jeong, Y. A. Kim, and M. J. M. Chang, "Carbon Nanomaterials as Versatile Platforms for Biosensing Applications," vol. 11, no. 9, p. 814, 2020.
  29. S. H. North, E. H. Lock, C. R. Taitt, S. G. J. A. Walton, and b. chemistry, "Critical aspects of biointerface design and their impact on biosensor development," vol. 397, no. 3, pp. 925-933, 2010.
  30. B. J. J. o. C. Lone and T. Nanoscience, "Computational nanotechnology in biomedical nanometrics and Nanomaterials," vol. 6, no. 10, pp. 2146-2151, 2009.
  31. K. Shavanova et al., "Application of 2D non-graphene materials and 2D oxide nanostructures for biosensing technology," vol. 16, no. 2, p. 223, 2016.
  32. N. J. Ronkainen, H. B. Halsall, and W. R. J. C. S. R. Heineman, "Electrochemical biosensors," vol. 39, no. 5, pp. 1747-1763, 2010.
  33. C. Zhu, G. Yang, H. Li, D. Du, and Y. J. A. c. Lin, "Electrochemical sensors and biosensors based on nanomaterials and nanostructures," vol. 87, no. 1, pp. 230-249, 2015.
  34. X. Ge, A. M. Asiri, D. Du, W. Wen, S. Wang, and Y. J. T. T. i. A. C. Lin, "Nanomaterial-enhanced paper-based biosensors," vol. 58, pp. 31-39, 2014.
  35. E. Dubuisson, Z. Yang, and K. P. J. A. C. Loh, "Optimizing label-free DNA electrical detection on graphene platform," vol. 83, no. 7, pp. 2452-2460, 2011.
  36. R. P. Schaudies, Biological Identification: DNA Amplification and Sequencing, Optical Sensing, Lab-On-Chip and Portable Systems. Elsevier, 2014.
  37. J. Ding and W. J. T. T. i. A. C. Qin, "Recent advances in potentiometric biosensors," vol. 124, p. 115803, 2020.
  38. A. J. N. Touhami, "Biosensors and nanobiosensors: design and applications," vol. 15, pp. 374-403, 2014.
  39. K. Girigoswami and N. J. I. J. o. N. D. Akhtar, "Nanobiosensors and fluorescence based biosensors: An overview," vol. 10, no. 1, pp. 1-17, 2019.
  40. N. M. Ravindra, C. Prodan, S. Fnu, I. Padronl, and S. K. J. J. Sikha, "Advances in the manufacturing, types, and applications of biosensors," vol. 59, no. 12, pp. 37-43, 2007.
  41. J. Peña-Bahamonde, H. N. Nguyen, S. K. Fanourakis, and D. F. J. J. o. n. Rodrigues, "Recent advances in graphene-based biosensor technology with applications in life sciences," vol. 16, no. 1, pp. 1-17, 2018.
  42. C. Zhu, Z. Zeng, H. Li, F. Li, C. Fan, and H. J. J. o. t. A. C. S. Zhang, "Single-layer MoS2-based nanoprobes for homogeneous detection of biomolecules," vol. 135, no. 16, pp. 5998-6001, 2013.
  43. T. N. Narayanan, C. S. Vusa, and S. J. N. Alwarappan, "Selective and efficient electrochemical biosensing of ultrathin molybdenum disulfide sheets," vol. 25, no. 33, p. 335702, 2014.
  44. H. Dong, Z. Zhu, H. Ju, F. J. B. Yan, and Bioelectronics, "Triplex signal amplification for electrochemical DNA biosensing by coupling probe-gold nanoparticles–graphene modified electrode with enzyme functionalized carbon sphere as tracer," vol. 33, no. 1, pp. 228-232, 2012.
  45. K. Jayakumar et al., "Gold nano particle decorated graphene core first generation PAMAM dendrimer for label free electrochemical DNA hybridization sensing," vol. 31, no. 1, pp. 406-412, 2012.
  46. W. Wang et al., "Ultrasensitive electrochemical DNA biosensor based on functionalized gold clusters/graphene nanohybrids coupling with exonuclease III-aided cascade target recycling," vol. 91, pp. 183-189, 2017.
  47. F. Liu, J. Y. Choi, T. S. J. B. Seo, and Bioelectronics, "Graphene oxide arrays for detecting specific DNA hybridization by fluorescence resonance energy transfer," vol. 25, no. 10, pp. 2361-2365, 2010.
  48. C. X. Lim, H. Y. Hoh, P. K. Ang, and K. P. J. A. C. Loh, "Direct voltammetric detection of DNA and pH sensing on epitaxial graphene: an insight into the role of oxygenated defects," vol. 82, no. 17, pp. 7387-7393, 2010.
  49. Y. Jiang, J. Tian, S. Chen, Y. Zhao, Y. Wang, and S. J. J. o. f. Zhao, "A Graphene Oxide–Based Sensing Platform for The Label-free Assay of DNA Sequence and Exonuclease Activity via Long Range Resonance Energy Transfer," vol. 23, no. 4, pp. 697-703, 2013.
  50. Y. Ye et al., "A label-free electrochemical DNA biosensor based on thionine functionalized reduced graphene oxide," vol. 129, pp. 730-737, 2018.
  51. L. Peng, Z. Zhu, Y. Chen, D. Han, W. J. B. Tan, and Bioelectronics, "An exonuclease III and graphene oxide-aided assay for DNA detection," vol. 35, no. 1, pp. 475-478, 2012.
  52. C. Liu, Z. Wang, H. Jia, and Z. J. C. C. Li, "Efficient fluorescence resonance energy transfer between upconversion nanophosphors and graphene oxide: a highly sensitive biosensing platform," vol. 47, no. 16, pp. 4661-4663, 2011.
  53. S. H. Qaddare, A. J. B. Salimi, and Bioelectronics, "Amplified fluorescent sensing of DNA using luminescent carbon dots and AuNPs/GO as a sensing platform: A novel coupling of FRET and DNA hybridization for homogeneous HIV-1 gene detection at femtomolar level," vol. 89, pp. 773-780, 2017.
  54. X.-H. Zhao, Q.-J. Ma, X.-X. Wu, and X. J. A. c. a. Zhu, "Graphene oxide-based biosensor for sensitive fluorescence detection of DNA based on exonuclease III-aided signal amplification," vol. 727, pp. 67-70, 2012.
  55. A. Singh et al., "Graphene oxide-chitosan nanocomposite based electrochemical DNA biosensor for detection of typhoid," vol. 185, pp. 675-684, 2013.
  56. J. Wang, A. Shi, X. Fang, X. Han, and Y. J. A. b. Zhang, "An ultrasensitive supersandwich electrochemical DNA biosensor based on gold nanoparticles decorated reduced graphene oxide," vol. 469, pp. 71-75, 2015.
  57. M. Du, T. Yang, and K. J. J. o. M. C. Jiao, "Immobilization-free direct electrochemical detection for DNA specific sequences based on electrochemically converted gold nanoparticles/graphene composite film," vol. 20, no. 41, pp. 9253-9260, 2010.
  58. M. Chen et al., "A sensitive electrochemical DNA biosensor based on three-dimensional nitrogen-doped graphene and Fe3O4 nanoparticles," vol. 239, pp. 421-429, 2017.
  59. Q. Gong, Y. Wang, H. J. B. Yang, and Bioelectronics, "A sensitive impedimetric DNA biosensor for the determination of the HIV gene based on graphene-Nafion composite film," vol. 89, pp. 565-569, 2017.
  60. L. Zhu, L. Luo, Z. J. B. Wang, and Bioelectronics, "DNA electrochemical biosensor based on thionine-graphene nanocomposite," vol. 35, no. 1, pp. 507-511, 2012.
  61. W. Sun et al., "Electrochemical DNA biosensor for the detection of Listeria monocytogenes with dendritic nanogold and electrochemical reduced graphene modified carbon ionic liquid electrode," vol. 85, pp. 145-151, 2012.
  62. M. Muti, S. Sharma, A. Erdem, and P. J. E. Papakonstantinou, "Electrochemical monitoring of nucleic acid hybridization by single‐use graphene oxide‐based sensor," vol. 23, no. 1, pp. 272-279, 2011.
  63. P. A. Rasheed, N. J. S. Sandhyarani, and A. B. Chemical, "Graphene-DNA electrochemical sensor for the sensitive detection of BRCA1 gene," vol. 204, pp. 777-782, 2014.
  64. B. Li et al., "Graphene electrode modified with electrochemically reduced graphene oxide for label-free DNA detection," vol. 72, pp. 313-319, 2015.
  65. D. Sarkar, W. Liu, X. Xie, A. C. Anselmo, S. Mitragotri, and K. J. A. n. Banerjee, "MoS2 field-effect transistor for next-generation label-free biosensors," vol. 8, no. 4, pp. 3992-4003, 2014.
  66. K. Mao, Z. Wu, Y. Chen, X. Zhou, A. Shen, and J. J. T. Hu, "A novel biosensor based on single-layer MoS2 nanosheets for detection of Ag+," vol. 132, pp. 658-663, 2015.
  67. S. Su, H. Sun, F. Xu, L. Yuwen, C. Fan, and L. J. M. A. Wang, "Direct electrochemistry of glucose oxidase and a biosensor for glucose based on a glass carbon electrode modified with MoS 2 nanosheets decorated with gold nanoparticles," vol. 181, no. 13-14, pp. 1497-1503, 2014.
  68. A. Bhattacharjee and M. J. M. L. Ahmaruzzaman, "Facile synthesis of 2-dimensional CuO nanoleaves and their degradation behavior for Eosin Y," vol. 161, pp. 20-25, 2015.
  69. W. Zhai, C. Wang, P. Yu, Y. Wang, and L. J. A. c. Mao, "Single-layer MnO2 nanosheets suppressed fluorescence of 7-hydroxycoumarin: mechanistic study and application for sensitive sensing of ascorbic acid in vivo," vol. 86, no. 24, pp. 12206-12213, 2014.
  70. B.-S. Kong, J. Geng, and H.-T. J. C. C. Jung, "Layer-by-layer assembly of graphene and gold nanoparticles by vacuum filtration and spontaneous reduction of gold ions," no. 16, pp. 2174-2176, 2009.
  71. M. S. Artiles, C. S. Rout, and T. S. J. A. d. d. r. Fisher, "Graphene-based hybrid materials and devices for biosensing," vol. 63, no. 14-15, pp. 1352-1360, 2011.
  72. D. Du, Y. Yang, and Y. J. M. b. Lin, "Graphene-based materials for biosensing and bioimaging," vol. 37, no. 12, pp. 1290-1296, 2012.
  73. L. Lin, Y. Liu, L. Tang, and J. J. A. Li, "Electrochemical DNA sensor by the assembly of graphene and DNA-conjugated gold nanoparticles with silver enhancement strategy," vol. 136, no. 22, pp. 4732-4737, 2011.
  74. X. Sun et al., "Multilayer graphene–gold nanocomposite modified stem-loop DNA biosensor for peanut allergen-Ara h1 detection," vol. 172, pp. 335-342, 2015.
  75. N. Varghese et al., "Binding of DNA nucleobases and nucleosides with graphene," vol. 10, no. 1, pp. 206-210, 2009.
  76. B. J. J. N. N. Lone, "Adsorption of cytosineon single-walled carbon nanotubes," vol. 7, no. 354, p. 2, 2016.

International Journal of Scientific Research in Science, Engineering and Technology

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Published

2022-04-30

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Volume 9, Issue 2, March-April-2022

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Research Articles

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[1]
Shamsan Ali, Baliram G. Lone, " Applications of DNA bases, Graphene and Biosensors : A Critical Review, International Journal of Scientific Research in Science, Engineering and Technology(IJSRSET), Print ISSN : 2395-1990, Online ISSN : 2394-4099, Volume 9, Issue 2, pp.303-313, March-April-2022. Available at doi : https://doi.org/10.32628/IJSRSET229247